Statistics on protein trees
The protein tree pipeline is described at the following page.
This page provides a summary of the Ensembl phylogenetic analysis of protein families. The following views are available:- Overview
- Gene tree coverage and Gene QC for each species
- Size of gene trees (split by their root taxon)
- Gene tree nodes, and the inference of speciation / duplication events
Overall Summary
| Legend | ||||||
|---|---|---|---|---|---|---|
| Internal nodes (ancestral taxa) | Node types | Speciations | Duplications | Dubious nodes | ||
| Leaves (extant species) | Gene tree coverage | Genes in multi-species trees | Genes in single-species trees | Orphaned genes | ||
| Gene QC | Validated genes | Short genes | Long genes | Split genes | ||
 |  | | Aedes albopictus (Aedes albopictus strain Foshan) | ||||||||||||||||||||
| |  | | | |  | | Aedes aegypti (LVP_AGWG) (Aedes aegypti strain LVP_AGWG) | |||||||||||||||
 | | | | | Culex quinquefasciatus (Culex quinquefasciatus strain Johannesburg) | ||||||||||||||||||
| | | | | | | | Anopheles atroparvus (Anopheles atroparvus strain EBRO) | |||||||||||||||
| | | | | Anopheles sinensis (Anopheles sinensis strain SINENSIS) | ||||||||||||||||||
| |  | | | | | | | Anopheles darlingi (Anopheles darlingi strain Coari) | ||||||||||||||
| | | | | Anopheles albimanus (Anopheles albimanus strain STECLA) | ||||||||||||||||||
| | | | | | | | Anopheles stephensi (Anopheles stephensi strain SDA-500) | |||||||||||||||
| | | | | Anopheles maculatus (Anopheles maculatus strain maculatus3) | ||||||||||||||||||
| | | | | | | Anopheles dirus (Anopheles dirus strain WRAIR2) | ||||||||||||||||
| | | | | Anopheles farauti (Anopheles farauti strain FAR1) | ||||||||||||||||||
| | | | | Anopheles culicifacies (Anopheles culicifacies strain A-37) | ||||||||||||||||||
| | | | | | | Anopheles funestus (Anopheles funestus strain FUMOZ) | ||||||||||||||||
| | | | | Anopheles minimus (Anopheles minimus strain MINIMUS1) | ||||||||||||||||||
| | | | | Anopheles coluzzii (Anopheles coluzzii strain Mali-NIH) | ||||||||||||||||||
| | | | | Anopheles arabiensis (Anopheles arabiensis strain Dongola) | ||||||||||||||||||
| | | | | | Anopheles merus (Anopheles merus strain MAF) | |||||||||||||||||
| | | | | | Anopheles quadriannulatus (Anopheles quadriannulatus strain SANGWE) | |||||||||||||||||
| | | | | | Anopheles gambiae (Anopheles gambiae strain PEST) | |||||||||||||||||
| | | | | Anopheles melas (Anopheles melas strain CM1001059_A) | ||||||||||||||||||
| | | | | | Anopheles christyi (Anopheles christyi strain ACHKN1017) | |||||||||||||||||
| | | | | | | Anopheles epiroticus (Anopheles epiroticus strain Epiroticus2) | ||||||||||||||||
| | | | | | | | | | | | | Phlebotomus papatasi (Phlebotomus papatasi strain Israel) | ||||||||||
| | | | Lutzomyia longipalpis (Lutzomyia longipalpis strain Jacobina) | |||||||||||||||||||
| | | | | | | Musca domestica (Musca domestica strain aabys) | ||||||||||||||||
| | | | | Stomoxys calcitrans (Stomoxys calcitrans strain USDA) | ||||||||||||||||||
| | | | | | | Glossina palpalis (Glossina palpalis gambiensis strain IAEA) | ||||||||||||||||
| | | | | | | | Glossina fuscipes fuscipes (Glossina fuscipes fuscipes strain IAEA) | |||||||||||||||
| | | | | | | | Glossina morsitans (Glossina morsitans morsitans strain Yale) | |||||||||||||||
| | | | | | | | | | | Glossina austeni (Glossina austeni strain TTRI) | ||||||||||||
| | | | | | Glossina pallidipes (Glossina pallidipes strain IAEA) | |||||||||||||||||
| | | | | | | Glossina brevipalpis (Glossina brevipalpis strain IAEA) | ||||||||||||||||
| | | | | | | | | | | Drosophila melanogaster (Drosophila melanogaster) | ||||||||||||
| | | | | | Cimex lectularius (Cimex lectularius strain Harlan) | |||||||||||||||||
| | | | | | | | | | | | | | | | Rhodnius prolixus (Rhodnius prolixus strain CDC) | |||||||
| | | | | | Pediculus humanus (Pediculus humanus corporis strain USDA) | |||||||||||||||||
| | | | | Sarcoptes scabiei (Sarcoptes scabiei strain Arlian) | ||||||||||||||||||
| | | | | | | | | | | | | | | | | Leptotrombidium deliense (Leptotrombidium deliense strain UoL-UT) | ||||||
| | | | | Ixodes scapularis (Ixodes scapularis strain Wikel) | ||||||||||||||||||
| | | | | | | | | | | | | | | | | | | | Biomphalaria glabrata (Biomphalaria glabrata strain BB02) |
