Data files

VectorBase is committed to a new release every two months. A list of changes and the latest data (e.g., current gene sets) relative to a specific release can be found in our release notes. Current and archived data are available for download below (an FAQ provides a summary of the file types).

Displaying 1 - 12 of 12
Double-click species to show assemblies
Operations
 File Organism Size Type Description
Pediculus-humanus-USDA_CONTIGS_PhumU2.fa.gz Pediculus humanus 31.55 MB Contigs USDA strain genomic contig sequences, PhumU2 assembly.
Pediculus-humanus-USDA_SCAFFOLDS_PhumU2.fa.gz Pediculus humanus 31.5 MB Scaffolds USDA strain genomic scaffold sequences, PhumU2 assembly, softmasked using Dust and TRF.
Pediculus-humanus-USDA_PEPTIDES_PhumU2.4.fa.gz Pediculus humanus 3.55 MB Peptides USDA strain peptide sequences, PhumU2.4 geneset.
Pediculus-humanus-USDA_TRANSCRIPTS_PhumU2.4.fa.gz Pediculus humanus 5.32 MB Transcripts USDA strain transcript sequences, PhumU2.4 geneset.
Pediculus-humanus-USDA_BASEFEATURES_PhumU2.4.gff3.gz Pediculus humanus 2.08 MB Basefeatures USDA strain PhumU2.4 geneset in GFF3 format.
Pediculus-humanus-USDA_BASEFEATURES_PhumU2.4.gtf.gz Pediculus humanus 1.69 MB Basefeatures USDA strain PhumU2.4 geneset in GTF (v2.2) format.
Pediculus-humanus_EST-CLIPPED_2012-12.fa.gz Pediculus humanus 188.47 KB ESTs Publicly submitted EST/cDNAs as of December 2012 with ends trimmed for poly A|T sequences.
Pediculus-humanus_EST-RAW_2012-12.fa.gz Pediculus humanus 188.9 KB Raw Publicly submitted EST/cDNAs as of December 2012.
Pediculus-humanus-USDA_CONTIG2SCAFFOLD_PhumU2.agp.gz Pediculus humanus 192.79 KB Contig to Scaffold mapping AGP (v2.0) file relating contigs to scaffolds for the Pediculus humanus USDA strain, PhumU2 assembly.
Pediculus-humanus-USDA_MAPPINGS_PhumU2.1-PhumU2.2.txt Pediculus humanus 61.41 KB ID Mapping Stable ID mapping between genesets PhumU2.1 and PhumU2.2 (RNA gene update)
Pediculus-humanus-USDA_REPEATS.lib Pediculus humanus 97.52 KB RepeatMasker library RepeatMasker library file of repeats for Pediculus humanus, USDA strain.
Pediculus-humanus-USDA_REPEATFEATURES_PhumU2.gff3.gz Pediculus humanus 10.14 MB Repeat features USDA strain PhumU2 repeat features (RepeatMasker, Dust, TRF) in GFF3 format.